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| Dataset construction | |||||||
|---|---|---|---|---|---|---|---|
| Primary set (lectin sequences from PIR/PRF/PDB/DDBJ/EMBL/Genbank/SwissProt) | |||||||
| Filtered set | |||||||
| Manual inspection of annotation | |||||||
Lectin set after removal of sequences less than 50 in length |
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| Number of lectin receptors in the final set | |||||||
| Number of organisms in the final set | 206 |
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| Domain Annotation | ||||||
|---|---|---|---|---|---|---|
| Total Number of Domains in the database | ||||||
Total/Unique Domains identified from: |
CDD |
COG |
KOG |
SMART | PFAM
|
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Td: Sum of unique domains in all domain databases |
(contains lectin domains) other domains |
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Unique domains from Td |
(contains lectin domains) |
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Receptor Domains |
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| Structural Annotation | |||
|---|---|---|---|
| Lectins whose structure is available through PDB | |||
| Lectins whose structure can be built by homology modeling | |||
| Lectins or domains in lectin containing proteins, whose structure can be predicted (in part or full) by fold recognition | |||
| Lectin containing proteins with no structural annotation | |||
| Distribution of lectin domains across various folds | |
|---|---|
| Functional Annotation | |||
|---|---|---|---|
| Number of lectins with annotation from | |||
| InterPro | |||
GO |
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PRINTS |
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PRODOM |
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PROSITE |
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Number of plants with known carbohydrate specificity |
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Number of lectins predicted to have a signal peptide |
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OMIM |
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